GeneChip Command Console Software is the instrument control software for GeneChip systems. Command Console Software provides an intuitive set of tools for instrument control and data management used in the processing of Axiom and GeneChip arrays.
Key features:
- Provides summary of probe cell intensity data (CEL file generation); enables sample and array registration, data management, instrument control, and automatic and manual image gridding
- Enables flexibility to customize, automate, and integrate workflows with a variety of laboratory information management systems.
- Supports the full range of assays by enabling seamless integration with downstream primary analysis applications such as Axiom Analysis Suite and Transcriptome Analysis Console (TAC) Software.
- Compatible with all the commercially available GeneChip analysis applications through direct import of sample attribute and array data
We enable an open informatics platform that uses industry-standard file formats for sample annotations and open file formats to access Axiom and GeneChip array data. Inside Axiom and GeneChip-compatible analysis applications, sample attributes and array data are merged with automated downloads of library files and NetAffx annotations, providing streamlined data analysis workflows.
GeneChip Command Console 6.0+ provides flexible and powerful tools for:
- Entering and organizing information about the sample, Axiom, and GeneChip probe arrays
- Controlling the instruments used to process probe arrays and collect the intensity data
- Tracking the progress of an array through the array processing workflow
- Working seamlessly with other tools for downstream analysis
- Monitor a GeneTitan Multi-Channel (GTMC) instrument remotely using the Connect cloud platform
- Faster scan time on GTMC instrument
Basic features |
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Unique functions |
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Supported instruments |
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Applications |
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Price/Delivery/Support |
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Benefits
- File-based software for easy data sharing
- Flexible GeneChip processing workflow
- Integrated instrument control
- Simplified data management
- Integration and customization for end users and third-party software tools
Instrument support
This release of Command Console Software supports the following instruments:
- GeneTitan Instrument
- Fluidics Station 450
- GeneChip Scanner 3000
- All research-use-only models are supported. The GeneChip Scanner 3000 Dx is not supported.
Array support
This release of Command Console Software supports all cartridge-based arrays and array plates.
GeneChip Command Console 6.0+ provides flexible and powerful tools for:
- Entering and organizing information about the sample, Axiom, and GeneChip probe arrays
- Controlling the instruments used to process probe arrays and collect the intensity data
- Tracking the progress of an array through the array processing workflow
- Working seamlessly with other tools for downstream analysis
- Monitor a GeneTitan Multi-Channel (GTMC) instrument remotely using the Connect cloud platform
- Faster scan time on GTMC instrument
Basic features |
|
Unique functions |
|
Supported instruments |
|
Applications |
|
Price/Delivery/Support |
|
Benefits
- File-based software for easy data sharing
- Flexible GeneChip processing workflow
- Integrated instrument control
- Simplified data management
- Integration and customization for end users and third-party software tools
Instrument support
This release of Command Console Software supports the following instruments:
- GeneTitan Instrument
- Fluidics Station 450
- GeneChip Scanner 3000
- All research-use-only models are supported. The GeneChip Scanner 3000 Dx is not supported.
Array support
This release of Command Console Software supports all cartridge-based arrays and array plates.
NOTE:
- Software downloaded from this site is ONLY for data analysis with offline computers. Do not attempt to install software on computer connected to instrument without Thermo Fisher Field Service Engineer
- For more information, please contact your local Field Service Engineer or Technical Support.
GeneChip Command Console Software 6.1.3 Patch Only (zip, 126 MB)
GCC 6.1.3 has been validated on US English version of Windows 10 Enterprise 2016 LTSB and 2019 LTSC operating system. GCC 6.1.3 is not a full installation package. GCC 6.1.3 requires GCC 6.1 or above to be installed on the system before installing GCC 6.1.3. For additional information, refer to the README file and GCC 6.1.3 release notes.
GeneChip Command Console Software 6.1 (zip, 546 MB)
GCC 6.1.1 has been validated on Windows 10 operating system. Before installation of GCC 6.1.1, please remove prior installation of Microsoft SQL Server 2005 and any previous GCC/AGCC software versions. Reboot computer, then run GCC 6.1 installation. After GCC 6.1 is installed, apply GCC 6.1.1 update (zip, 6 MB). For additional information, refer to GCC 6.1 release notes and GCC 6.1.1 release notes.
GeneChip Command Console Software 4.3.4 Patch Only (zip, 98 MB)
AGCC 4.3.4 is a software patch to improve grid alignment and address the issue of batch registration errors once Microsoft Security Update KB4041681 is applied. The patch requires installation of AGCC 4.1.2 first. This patch is recommended for all Windows 7 users running AGCC 4.1.2 or higher. Refer to the AGCC 4.3.4 release notes for more information prior to installation of this patch.
GeneChip Command Console Software 4.1.2 (zip, 383 MB)
AGCC 4.1.2 has been validated on Windows XP 32Bit and Windows 7 64Bit. Customers who currently have a 32-bit instrument workstation may need to either purchase a new 64-bit workstation or upgrade their workstation to 64-bit via an Affymetrix-recommended upgrade path.
Additional information
- Affymetrix Developers' Network web pages contain archived web talks on the Command Console technology, as well as information on the Fusion SDK (compatible with both GCOS and Command Console Software), including source code. Software developers: learn more about integrating with Command Console Software.
Required products
- GeneChip Fluidics Station 450
- GeneChip Hybridization Oven 645
- GeneChip Scanner 3000 7G
- GeneChip Scanner 3000 7G Plus Targeted Genotyping System
- GeneChip Scanner 3000 7G Whole-Genome Association System
- Complete GeneChip Instrument System
- QC Toolbox Software Kit, Version 2.2
- OncoScan™ FFPE Assay Kit
- GeneTitan Multi-Channel (MC) Instrument
For Research Use Only. Not for use in diagnostic procedures.